Publications 2025Transcriptomic Plasticity is a Hallmark of Metastatic Pancreatic CancerHierarchical Refinement: Optimal Transport to Infinity and BeyondGeospatially Informed Representation of Spatial Genomics Data with SpatialFeatureExperimentInferring Active Mutational Processes in Cancer using Single-Cell Sequencing and Evolutionary ConstraintsCaspase 3 and Caspase 7 Promote Cytoprotective Autophagy and the DNA Damage Response during Non-Lethal Stress Conditions in Human Breast Cancer CellsBirth and Death Processes in Phylogenetics and Population GeneticsThe Tree Labeling Polytope: A Unified Approach to Ancestral Reconstruction ProblemsJoint Imputation and Deconvolution of Gene Expression across Spatial Transcriptomics PlatformsResolving Discrepancies between Chimeric and Multiplicative Measures of Higher-Order EpistasisStatistical Framework for Analyzing Shape in a Time Series of Random Geometric ObjectsiLOCO: Distribution-Free Inference for Feature InteractionsGASTON-Mix: a Unified Model of Spatial Gradients and Domains using Spatial Mixture-of-ExpertsccfDNA Analysis for the Classification of Adrenocortical Adenomasp53 Mutation Biases Squamocolumnar Junction Progenitor Cells Towards Dysplasia Rather than Metaplasia in Barrett’s OesophagusCoordinated Immune Networks in Leukemia Bone Marrow Microenvironments Distinguish Response to Cellular TherapyGlioma-Induced Alterations in Excitatory Neurons are Reversed by mTOR InhibitionInterpretable Neural ODEs for Gene Regulatory Network Discovery under Perturbations2024Subsampling, Aligning, and Averaging to Find Circular Coordinates in Recurrent Time SeriesPosterior Mean Matching: Generative Modeling through Online Bayesian InferenceEchidna: A Bayesian Framework for Quantifying Gene Dosage Effect Impacting Phenotypic PlasticityAdaptive Nonparametric Perturbations of Parametric Bayesian ModelsAutomated Cell Type Annotation with Reference Cluster MappingCharacterizing the Evolutionary Dynamics of Cancer Proliferation in Single-Cell Clones with SPRINTERFerroptosis—Disease Perils and Therapeutic PromiseLuminal Breast Epithelial Cells of BRCA1 or BRCA2 Mutation Carriers and Noncarriers Harbor Common Breast Cancer Copy Number AlterationsSquidiff: Predicting Cellular Development and Responses to Perturbations Using a Diffusion ModelAutomated Real-World Data Integration Improves Cancer Outcome PredictionJoint Representation and Visualization of Derailed Cell States with DecipherTumour Evolution and Microenvironment Interactions in 2D and 3D SpaceEstimating the Causal Effects of T Cell ReceptorsFeatured Publicationedit publication{{ name }}. . . Abstract Citation No resultsThere are no publications with the provided filters.Sort Publications ByKeyword filter: {{ filter.label }}
Inferring Active Mutational Processes in Cancer using Single-Cell Sequencing and Evolutionary Constraints
Caspase 3 and Caspase 7 Promote Cytoprotective Autophagy and the DNA Damage Response during Non-Lethal Stress Conditions in Human Breast Cancer Cells
p53 Mutation Biases Squamocolumnar Junction Progenitor Cells Towards Dysplasia Rather than Metaplasia in Barrett’s Oesophagus
Coordinated Immune Networks in Leukemia Bone Marrow Microenvironments Distinguish Response to Cellular Therapy
Luminal Breast Epithelial Cells of BRCA1 or BRCA2 Mutation Carriers and Noncarriers Harbor Common Breast Cancer Copy Number Alterations
