|
A Conserved Landscape of Chemokine Receptor Co-Expression Defines the Functional States of CD8+ T Cells in Melanoma. Macedo, R.; Harle, David. W.; Hoffer-Hawlik, K.; Wang, X. K.; McMahon-Skates, T.; Matschiner, A.; Belay, K.; Saenger, Y. M.; Izar, B.; Azizi, E.; Reshef, R. bioRxiv 2025.
A Robust Human Airway Organoid Platform Enables Scalable Expansion and Trajectory Mapping of Pulmonary Neuroendocrine Cells. Candeli, N.; den Hartigh, L.; Hou, N.; Marco, A.; Sánchez-Villacaña, J. A.; Garcia-Gonzales, A.; Gandhi, S.; Sgualdino, F.; Miller, A. J.; Spence, J.; de Sousa Lopes, S. C.; McFaline-Figueroa, J. L.; Clevers, H.; Dayton, T. L. bioRxiv, 2026.
Bayesian Empirical Bayes: Simultaneous Inference from Probabilistic Symmetries. Wu, B.; Weinstein, E. N.; Blei, D. M. ArXiv 2025.
Determinants of Sensitivity to HER2-Targeted Antibody Drug Conjugates in Urothelial Cancer. Chen, Z.; Tang, X.; Eichholz, J. E.; Mcpherson, A.; Thomas, J.; Nagar, K.; Rustgi, N.; Christin, J. R.; Kuo, F.; Gao, S.; Jiang, H.; Luo, J.; Ostrovnaya, I.; Basar, M.; Pietzak, E.; Coleman, J. A.; Berger, M. F.; de Stanchina, E.; Shah, S. P.; Mohibullah, N.; Aggen, D. H.; Rosenberg, J. E.; Chandarlapaty, S.; Shen, M. M.; Al-Ahmadie, H.; Iyer, G.; Kim, K.; Solit, D. B. Nature Communications 2025, in press.
Efficient Algorithms for Simulating Sequences along a Phylogenetic Tree. Wygoda, E.; Moshe, A.; Serok, N.; Dotan, E.; Ecker, N.; Jabareen, N.; Israeli, O.; Pe’er, I.; Pupko, T. Bioinformatics 2025, btaf686.
Harnessing Biological Variability for Mechanistic Inference: A Practical Stochastic Framework. Wang, R-Y.; Danciu, D-P.; Klawe, F. Z.; Marciniak-Czochra, A. bioRxiv 2025.
Inferring Cell Differentiation Dynamics with Unobserved Progenitors. Howard-Snyder, W.; Zhang, R.; Schmidt, H.; Chan, M.; Raphael, B. J. bioRxiv 2025.
Mapping Kinase-Dependent Tumor Immune Adaptation with Multiplexed Single-Cell CRISPR Screens. Shi, L.; Giglio, R. M.; Cai, Q.; Vaikunthan, M.; Hong, J.; Naqvi, A.; Milea, M.; Khanshali, H.; Schoonen, A.; Hou, N.; Guo, J.; Fraidenburg, M.; Shen, X.; Malinowski, S. W.; Ligon, K. L.; Rabadán, R.; Azizi, E.; McFaline-Figueroa, J. L. bioRxiv 2026.
Riemannian Metric Learning for Alignment of Spatial Multiomics. Halmos, P.; Xia, Y.; Raphael, B. J. bioRxiv 2025.
Striatal Ensembles Specify and Control Granular Forelimb Actions. Rodrigues-Vaz, I.; Athalye, V. R.; Peterka, D. S.; Costa, R. M. bioRxiv 2025.
|
