IICD Newsletter November 2025

November 03, 2025
Stay Informed: IICD November 2025 News and Events 🔬
November 3, 2025
 

Alumni Spotlight: Mingzhang Yin - Exploring the Frontiers of Data Science and Marketing

Mingzhang Yin

Meet Dr. Mingzhang Yin, a former IICD postdoctoral scholar now advancing the fields of marketing and artificial intelligence as an assistant professor at the University of Florida. Dr. Yin’s work bridges Bayesian statistics, machine learning, and quantitative marketing, with a focus on both theoretical innovation and real-world impact. Learn more about his academic journey and interdisciplinary research in this month’s Alumni Spotlight.

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Vicković Lab Publishes a New Study on Colon Aging in Nature Biotechnology

cSplotch Summary Schematic

Dr. Sanja Vicković’s lab developed a new computational framework to investigate cell and tissue organization in pathology. Their work was recently published in Nature Biotechnology. This landmark paper presents a comprehensive spatial and cellular atlas of the aging colon, profiling ~1,500 mouse tissues and 400,000 nuclei across 11 age groups.

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STEM Starters Inspiring the Next Generation of Scientists

Children decrypting ciphers written in invisible ink

The Institute has launched a new collaboration with STEM Starters, a Columbia graduate student-led science outreach organization. Through free monthly events, STEM Starters offers hands-on science workshops for local elementary and middle-school students and their families in Harlem. This collaboration reflects IICD’s broader commitment to public engagement and science education, making science accessible at every age.

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IICD Seminar Series: November Seminar

Headshot of Ken Chen
 
Cellular Modeling for Studying Cancer Dynamics in Tumor Immune Microenvironment

Hosted by Khanh Dinh, PhD 
Date: November 12, 2025
Time: 2:00 PM (ET)
Location: Schermerhorn
Hall 603
 and via Zoom


 
Register Here

IICD Highlights

Genevera Allen headshot
Dr. Genevera Allen will participate in the upcoming Stavros Niarchos Foundation Brain Insight Lecture organized by Columbia Zuckerman institute on November 5th. In this event, three experts bring together perspectives spanning statistics, genomics, and neuroscience to discuss the stories data can tell us.

 
Brent Stockwell headshot
Congratulations to Dr. Brent Stockwell who was awarded an NCI P01 grant in collaboration with Xuejun Jiang and Wei Gu to explore how cancers modulate ferroptosis through lipid metabolism, with the goal of developing new cancer therapeutic strategies for treating aggressive malignancies. Read more.

 
IICD SRP 2026: Now Accepting Applications
Flyer for IICD SRP 2026

The Irving Institute for Cancer Dynamics at Columbia University offers a 10-week research opportunity for talented undergraduate students to perform cutting-edge research at the intersection of cancer biology and mathematical sciences. Areas of research span from cancer biology to computer science, mathematics, statistical bioinformatics, engineering, and more. Deadline to apply is February 1, 2026.

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 IICD Launches From Theory to Practice: A New Workshop Series with an Inaugural Quantitative Immunology Session
flyer for From Theory to Practice: IICD Workshop Series

Columbia Researchers:
Join us on November 19 (2-5 pm) for the inaugural session of the From Theory to Practice: IICD Workshop Series: a hands-on Quantitative Immunology Workshop led by Dr. Sanket Rane. This workshop will focus on establishing foundational quantitative approaches for understanding and modeling the complexity of our immune system.
Deadline to apply is November 17.

Learn More and Register

Recent Publications from IICD Researchers

Approximate Bayesian Computation Sequential Monte Carlo via Random Forests. Dinh, K. N.; Liu, C.; Xiang, Z.; Liu, Z.; Tavaré, S. Statistics and Computing 2025, 35 (6), 219.

Discrete Scalar Curvature as a Weighted Sum of Ollivier-Ricci Curvatures. Hickok, A.; Blumberg, A. arXiv 2025.

Energy Guided Geometric Flow Matching. Zweig, A.; Zhang, M.; Azizi, E.; Knowles, D. arXiv 2025.

Inpainting the Neural Picture: Inferring Unrecorded Brain Area Dynamics from Multi-Animal Datasets. Xia, J.; Zhang, Y.; Wang, S.; Allen, G. I.; Paninski, L.; Hurwitz, C. L.; Miller, K. D. arXiv 2025.


QWENDY: Gene Regulatory Network Inference by Quadruple Covariance Matrices. Wang, Y.; Tian, X. Bulletin of Mathematical Biology 2025, 87 (11), 167.

Statistical and Evolutionary Analysis of Sequenced DNA from Breast Cancer FFPE Specimens. Kurpas, M. K.; Kus, P.; Jaksik, R.; Dinh, K. N.; Adamczyk, A.; Majchrzyk, K.; Kimmel, M. bioRxiv 2025.

Tissue and Cellular Spatiotemporal Dynamics in Colon Aging. Daly, A. C.; Cambuli, F.; Äijö, T.; Lötstedt, B.; Marjanovic, N. D.; Fernandez, S.; Kuksenko, O.; Smith-Erb, M.; Domovic, D.; Van Wittenberghe, N.; Drokhlyansky, E.; Griffin, G. K.; Phatnani, H.; Bonneau, R.; Regev, A.; Vickovic, S. Nature Biotechnology 2025, in press.

Top-k Feature Importance Ranking. Chen, Y.; Tang, T.; Allen, G. arXiv 2025.
 
Tracking Clonal Evolution during Treatment in Ovarian Cancer Using Cell-Free DNA. Williams, M. J.; Vázquez-García, I.; Tam, G.; Wu, M.; Varice, N.; Havasov, E.; Shi, H.; Al-Rawi, D. H.; Satas, G.; Lees, H. J.; Lee, J. J.-K.; Myers, M. A.; Zatzman, M.; Rusk, N.; Ali, E.; Shah, R. H.; Berger, M. F.; Mohibullah, N.; Lakhman, Y.; Chi, D. S.; Abu-Rustum, N. R.; Aghajanian, C.; McPherson, A.; Zamarin, D.; Loomis, B.; Weigelt, B.; Friedman, C. F.; Shah, S. P. Nature 2025, in press.

In Case You Missed It

Catch up on the latest from our IICD community! Here are some highlights you might have missed on our social channels.

breast cancer awareness month article
YouTube Screenshot
Job Opportunities

1. Staff Associate III (IICD & Columbia SEAS Joint Position)
2. Associate Research Scientist (High-Throughput Perturbations)

3. Communications Specialist

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