A Heterogeneous Pharmaco-Transcriptomic Landscape Induced by Targeting a Single Oncogenic Kinase. Giglio, R. M.; Hou, N.; Wyatt, A.; Hong, J.; Shi, L.; Vaikunthan, M.; Fuchs, H.; Nima, J. P.; Malinowski, S. W.; Ligon, K. L.; McFaline-Figueroa, J. R.; Yosef, N.; Azizi, E.; McFaline-Figueroa, J. L. bioRxiv 2024.
Allele-Specific Transcriptional Effects of Subclonal Copy Number Alterations Enable Genotype-Phenotype Mapping in Cancer Cells. Shi, H.; Williams, M. J.; Satas, G.; Weiner, A. C.; McPherson, A.; Shah, S. P. Nat Commun 2024, 15 (1), 2482.
CINner: Modeling and Simulation of Chromosomal Instability in Cancer at Single-Cell Resolution. Dinh, K. N.; Vázquez-García, I.; Chan, A.; Malhotra, R.; Weiner, A.; Mcpherson, A.; Tavaré, S. bioRxiv 2024.
GAS41 Modulates Ferroptosis by Anchoring NRF2 on Chromatin. Wang, Z.; Yang, X.; Chen, D.; Liu, Y.;Li, Z.; Duan, S.; Zhang, Z.; Jiang, X.; Stockwell, B. R.; Gu, W. Nat Commun 2024, 15 (1), 2531.
Inference of Chromosome Selection Parameters and Missegregation Rate in Cancer from DNA-Sequencing Data. Xiang, Z.; Liu, Z.; Dinh, K. N. bioRxiv 2024.
Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography from Spatially Resolved Transcriptomics. Ma, C.; Balaban, M.; Liu, J.; Chen, S.; Ding, L.; Raphael, B. J. bioRxiv 2024.
Multiomics-Based Feature Extraction and Selection for the Prediction of Lung Cancer Survival. Jaksik, R.; Szumała, K.; Dinh, K. N.; Śmieja, J. International Journal of Molecular Sciences 2024, 25 (7), 3661.
Wasserstein Wormhole: Scalable Optimal Transport Distance with Transformers. Haviv, D.; Kunes, R. Z.; Dougherty, T.; Burdziak, C.; Nawy, T.; Gilbert, A.; Pe’er, D. arXiv 2024.
WENDY: Gene Regulatory Network Inference with Covariance Dynamics. Wang, Y.; Zheng, P.; Cheng, Y.-C.; Wang, Z.; Aravkin, A. bioRxiv 2024.
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