MMEJ Repair of Breaks at TA Repeats Maintains ecDNA and Cancer Fitness. Billing, D.; Selvaraj, M.; Kelley, M. E.; Matos-Rodrigues, G.; Bailey, B.; Becker, F.; Zhen, G.; Myers, M. A.; Brambati, A.; Ezekwenna, O.; Nichols, A.; Jiang, Y.-Z.; Wang, L.; Wang, S.-C.; Mathieu, M.-C.; Pradella, D.; Poirier, H.; Rodriguez-Fos, E.; Morris, S. J.; Zimmermann, M.; Callen, E.; Zinda, M.; Ventura, A.; Maciejowski, J.; McPherson, A.; Shah, S. P.; Henssen, A. G.; Nussenzweig, A.; Sfeir, A. Nature 2026, in press.
SHERLOCK: Structured Representation Learning and Causal Inference of Downstream Perturbation Effects. Zhang, M.; Myers, J. D.; Shi, L.; Giglio, R. M.; Chatterjee, S.; McFaline-Figueroa, J. L.; Azizi, E. bioRxiv 2026.
Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease. Shi, L.; Uzuni, A.; Wang, X. K.; Pressler, M.; Harle, D. W.; Chakrabarti, S.; Macedo, R.; Belay, K.; Gordillo, C. A.; McMahon-Skates, T.; Raps, E.; Zhang, J. Y. A.; Nazaret, A.; Fan, J. L.; Jin, Y.; Shen, X.; Fuller, J. S.; Azad, T.; Huang, J.; Chainani, P.; Nima, J. P.; Abrams, J. A.; Del Portillo, A.; Mapara, M. Y.; Alhamar, M.; Sykes, M.; McFaline-Figueroa, J. L.; Azizi, E.; Reshef, R. Nature Immunology 2026, in press.
Warm-Starting PDE Solvers with Any-Dimensional Machine Learning. Gregory, W. G.; Kevrekidis, G. A.; Blum-Smith, B.; Villar, S. arXiv 2026.
Wavelet-Based Whole Genome Doubling Aware Single-Cell Copy Number Calling. Wesley, B. K.; Wos, F.; Germer, S.; Carter, J. E. B.; Maniatis, S.; Dinh, K.; Roche, J. S.; Chu, T. R.; Robine, N.; Fitzgerald, R. C.; Zhuang, L.; Tavaré, S.; Nowicki-Osuch, K. Nucleic Acids Research 2026, 54 (18), gkag960.
